Index

A

ActNorm (class in hypertrack.flows) addEdge() (Graph method) adj2edges() (in module hypertrack.tools)

adjgraph_metrics() (in module hypertrack.measures) annotate_heatmap() (in module hypertrack.visualize) attach_fully_connected_node() (in module hypertrack.tools)

B

backtrack_linear_index() (in module hypertrack.tools)

backward() (in module hypertrack.auxtrain) BatchNormFlow (class in hypertrack.flows)

C

closure_test_adj() (in module hypertrack.tools) cluster_loss() (in module hypertrack.hyperaux) clusterize() (in module hypertrack.hyper) combine_data() (in module hypertrack.voxdyn) compare_cluster_multiplicity() (in module hypertrack.visualize) compare_hit_multiplicity() (in module hypertrack.visualize) compute_A_direct() (in module hypertrack.voxdyn) compute_A_reverse() (in module hypertrack.voxdyn) compute_A_reverse_3pt() (in module hypertrack.voxdyn) compute_adj_metrics() (in module hypertrack.measures) compute_ground_truth_A() (in module hypertrack.tools) compute_hit_mixing() (in module hypertrack.tools) compute_hyper() (in module hypertrack.tools)

compute_I_per_V() (in module hypertrack.voxdyn) compute_metrics() (in module hypertrack.measures) connectedComponents() (Graph method) construct_event_range() (in module hypertrack.iotools) contrastive_edge_loss() (in module hypertrack.losses) count_hit_multiplicity() (in module hypertrack.tools) count_parameters_torch() (in module hypertrack.torchtools) count_reco_cluster() (in module hypertrack.tools) CouplingLayer (class in hypertrack.flows) create_axes() (in module hypertrack.ratioplot) create_cluster_ind() (in module hypertrack.tools) create_cluster_labels() (in module hypertrack.tools) create_edge_label() (in module hypertrack.tools) crf() (in module hypertrack.visualize)

D

density_MVA_wclass() (in module hypertrack.visualize)

DFSUtil() (Graph method) DiceLogitsLoss (class in hypertrack.losses)

E

edge_loss() (in module hypertrack.hyperaux) edges2adj() (in module hypertrack.tools)

execute() (in module hypertrack.auxtrain) explicit_range() (in module hypertrack.tools)

F

faiss_to_gpu() (in module hypertrack.voxdyn) faisskNN (class in hypertrack.faissknn) fastcat_rand() (in module hypertrack.torchtools) find_connected_components() (in module hypertrack.tools) find_posneg_connections() (in module hypertrack.losses) fisher_loss() (in module hypertrack.losses) fisher_threshold() (in module hypertrack.losses) fit() (faisskNN method) FlowSequential (class in hypertrack.flows) FocalWithLogitsLoss (class in hypertrack.losses) forward() (ActNorm method) (BatchNormFlow method) (CouplingLayer method) (DiceLogitsLoss method) (FlowSequential method) (FocalWithLogitsLoss method) (HingeLoss method) (InvertibleMM method) (JaccardLogitsLoss method) (Logit method) (LUInvertibleMM method) (MADE method) (MADESplit method) (MaskedLinear method) (Reverse method) (Shuffle method) (Sigmoid method) (SmoothHingeLoss method)

G

generate_graph_data() (in module hypertrack.trackml) get_act() (in module hypertrack.dmlp) get_gpu_memory_map() (in module hypertrack.iotools)

get_mask() (in module hypertrack.flows) grab_torch_file() (in module hypertrack.iotools) Graph (class in hypertrack.tools)

H

HingeLoss (class in hypertrack.losses) hist_filled_error() (in module hypertrack.visualize) histedges_equal_N() (in module hypertrack.measures) hypertrack() (in module hypertrack.hyper) hypertrack.auxtrain module hypertrack.dmlp module hypertrack.faissknn module hypertrack.flows module hypertrack.hyper module hypertrack.hyperaux module hypertrack.iotools module

hypertrack.losses module hypertrack.measures module hypertrack.ratioplot module hypertrack.tools module hypertrack.torchtools module hypertrack.trackml module hypertrack.transforms module hypertrack.visualize module hypertrack.voxdyn module

I

imperial_brown (in module hypertrack.visualize)

intersect_loss() (in module hypertrack.losses) InvertibleMM (class in hypertrack.flows)

J

JaccardLogitsLoss (class in hypertrack.losses)

L

load_models() (in module hypertrack.auxtrain) (in module hypertrack.iotools) load_optimizers() (in module hypertrack.auxtrain) load_particle_data() (in module hypertrack.voxdyn)

load_reduce_event() (in module hypertrack.trackml) log_probs() (FlowSequential method) Logit (class in hypertrack.flows) loss_normalization() (in module hypertrack.hyperaux) LUInvertibleMM (class in hypertrack.flows)

M

MADE (class in hypertrack.flows) MADESplit (class in hypertrack.flows) majority_score() (in module hypertrack.measures) MaskedLinear (class in hypertrack.flows) Metric (class in hypertrack.measures) MLP() (in module hypertrack.dmlp) module hypertrack.auxtrain hypertrack.dmlp hypertrack.faissknn hypertrack.flows hypertrack.hyper hypertrack.hyperaux hypertrack.iotools hypertrack.losses hypertrack.measures hypertrack.ratioplot hypertrack.tools hypertrack.torchtools hypertrack.trackml hypertrack.transforms hypertrack.visualize hypertrack.voxdyn

N

normalize_cols() (in module hypertrack.tools)

normalize_rows() (in module hypertrack.tools)

P

plot_adj_matrices() (in module hypertrack.visualize) plot_C_matrix() (in module hypertrack.visualize) plot_grad_flow() (in module hypertrack.torchtools) plot_gradient_flow() (in module hypertrack.auxtrain) plot_horizontal_line() (in module hypertrack.ratioplot) plot_metrics() (in module hypertrack.auxtrain)

plot_mixing_matrix() (in module hypertrack.visualize) plot_tracks() (in module hypertrack.visualize) plot_voronoi() (in module hypertrack.visualize) print_clusters() (in module hypertrack.tools) process_data() (in module hypertrack.trackml) process_memory_use() (in module hypertrack.iotools)

R

ratioerr() (in module hypertrack.visualize) reduce_tracks() (in module hypertrack.trackml) Reverse (class in hypertrack.flows)

roc_curve() (in module hypertrack.measures) ROC_plot() (in module hypertrack.visualize) running_mean_uniform_filter1d() (in module hypertrack.tools)

S

sample() (FlowSequential method) save_models() (in module hypertrack.auxtrain) search() (faisskNN method) select_valid() (in module hypertrack.tools) seperate_weight_param() (in module hypertrack.torchtools) set_axis_ticks() (in module hypertrack.ratioplot) set_diff_1d() (in module hypertrack.torchtools) set_optimizer() (in module hypertrack.auxtrain) set_random_seed() (in module hypertrack.torchtools) set_scheduler() (in module hypertrack.auxtrain) showmem() (in module hypertrack.iotools)

showmem_cuda() (in module hypertrack.iotools) Shuffle (class in hypertrack.flows) Sigmoid (class in hypertrack.flows) SmoothHingeLoss (class in hypertrack.losses) span_adj_mat() (in module hypertrack.tools) split() (in module hypertrack.tools) split_size() (in module hypertrack.tools) split_start_end() (in module hypertrack.tools) stepspace() (in module hypertrack.ratioplot) subgraph_mask() (in module hypertrack.torchtools) sysinfo() (in module hypertrack.iotools)

T

tick_calc() (in module hypertrack.ratioplot) tick_creator() (in module hypertrack.ratioplot) timing() (in module hypertrack.tools) to_scipy_sparse_csr_matrix() (in module hypertrack.torchtools) torch_cuda_total_memory() (in module hypertrack.iotools) torch_intersect() (in module hypertrack.torchtools) torch_to_scipy_scr() (in module hypertrack.torchtools) track_effiency_plots() (in module hypertrack.visualize)

track_minimal_spanning_tree() (in module hypertrack.tools) train_2pt_connectivity() (in module hypertrack.voxdyn) train_2pt_connectivity_sparse() (in module hypertrack.voxdyn) train_3pt_connectivity() (in module hypertrack.voxdyn) train_voxdyn() (in module hypertrack.voxdyn) transform_r_eta_phi() (in module hypertrack.transforms) transformer_helper() (in module hypertrack.hyper) true_false_positive() (in module hypertrack.measures)

V

value_and_uncertainty_scientific() (in module hypertrack.tools)

voxdyn_predictor() (in module hypertrack.voxdyn)

W

weighted_degree() (in module hypertrack.torchtools)